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Sample GSM2593154 Query DataSets for GSM2593154
Status Public on May 01, 2017
Title case9_N_SNP
Sample type genomic
 
Source name Normal colon tissue
Organism Homo sapiens
Characteristics case: 9
gender: Female
age: 74
primary tumor differentiation: moderately differentiated
tumor or normal colon location: ascending colon
tissue sample: normal colon tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 70
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.5977594
rs3094315-131_B_F_1857408493 0 -0.1850734
rs3131972-131_T_R_1857421833 1 0.1077436
rs12562034-131_B_R_1858595326 0.5228591 0.2906733
rs12124819-131_B_R_1857380364 0 0.6934741
rs11240777-131_T_F_1857259998 0.5007154 -0.08846035
rs6681049-131_T_R_1858018399 0.9937465 -0.05156958
rs4970383-131_T_R_1857736617 1 0.009430564
rs4475691-131_T_R_1857599365 1 -0.1576404
rs7537756-131_T_F_1857298910 0.01779116 -0.09341093
rs2272756-131_B_F_1857180676 0.9982297 0.1775873
rs17160698-131_T_R_1856941558 0.000674224 -0.08302372
rs3748597-131_T_R_1853475664 0.9942777 0.0201522
rs13303106-131_T_F_1857538098 0.9885262 -0.1398133
rs28415373-131_T_R_1857337676 0.9620864 -0.008960634
rs28391282-131_T_F_1857337024 1 -0.2419862
rs13303118-131_B_F_1857538100 0.007346115 -0.1229216
rs2341354-131_T_F_1858039701 0.9943066 -0.1070156
rs6665000-131_T_F_1857014860 0.00716039 -0.1060256
rs2341362-131_B_R_1857209587 1 0.2393751

Total number of rows: 600129

Table truncated, full table size 27645 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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