NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2593152 Query DataSets for GSM2593152
Status Public on May 01, 2017
Title case8_T6_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 8
gender: Female
age: 76
primary tumor differentiation: moderately differentiated
tumor or normal colon location: sigmoid colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 68
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.5992931
rs3094315-131_B_F_1857408493 0.01803733 -0.2379262
rs3131972-131_T_R_1857421833 1 -0.09078387
rs12562034-131_B_R_1858595326 0.04926643 0.2995454
rs12124819-131_B_R_1857380364 0 0.5996567
rs11240777-131_T_F_1857259998 1 -0.1258213
rs6681049-131_T_R_1858018399 0.9998351 -0.01947774
rs4970383-131_T_R_1857736617 0.4445572 0.05805599
rs4475691-131_T_R_1857599365 1 -0.1882516
rs7537756-131_T_F_1857298910 0.003342715 -0.1682938
rs2272756-131_B_F_1857180676 1 -0.01307602
rs17160698-131_T_R_1856941558 0.009395651 -0.1254592
rs3748597-131_T_R_1853475664 1 -0.2019235
rs13303106-131_T_F_1857538098 0.9973484 -0.1212163
rs28415373-131_T_R_1857337676 1 -0.1136837
rs28391282-131_T_F_1857337024 1 -0.1340586
rs13303118-131_B_F_1857538100 0.005016307 -0.1175251
rs2341354-131_T_F_1858039701 0.997137 -0.2352073
rs6665000-131_T_F_1857014860 0.0204356 -0.4905308
rs2341362-131_B_R_1857209587 1 0.2181189

Total number of rows: 600129

Table truncated, full table size 27615 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap