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Sample GSM2593151 Query DataSets for GSM2593151
Status Public on May 01, 2017
Title case8_T5_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 8
gender: Female
age: 76
primary tumor differentiation: moderately differentiated
tumor or normal colon location: sigmoid colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 67
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.9020272
rs3094315-131_B_F_1857408493 0.01269695 -0.2543548
rs3131972-131_T_R_1857421833 1 0.01046903
rs12562034-131_B_R_1858595326 0.02819977 0.4292652
rs12124819-131_B_R_1857380364 0 0.8323969
rs11240777-131_T_F_1857259998 0.9614998 -0.03816422
rs6681049-131_T_R_1858018399 0.992839 -0.07514175
rs4970383-131_T_R_1857736617 0.5200983 -0.4579533
rs4475691-131_T_R_1857599365 0.9979187 -0.1251977
rs7537756-131_T_F_1857298910 0.008001407 -0.2697105
rs2272756-131_B_F_1857180676 0.9895853 0.06340874
rs17160698-131_T_R_1856941558 0.03557161 -0.1397172
rs3748597-131_T_R_1853475664 0.9802859 -0.02176498
rs13303106-131_T_F_1857538098 1 -0.2273691
rs28415373-131_T_R_1857337676 0.9803739 -0.185022
rs28391282-131_T_F_1857337024 1 -0.1736948
rs13303118-131_B_F_1857538100 0 -0.1302738
rs2341354-131_T_F_1858039701 0.994671 -0.09293532
rs6665000-131_T_F_1857014860 0.03777136 -0.3093641
rs2341362-131_B_R_1857209587 1 0.2511455

Total number of rows: 600129

Table truncated, full table size 27934 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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