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Sample GSM2593149 Query DataSets for GSM2593149
Status Public on May 01, 2017
Title case8_T3_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 8
gender: Female
age: 76
primary tumor differentiation: moderately differentiated
tumor or normal colon location: sigmoid colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 65
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.7070667
rs3094315-131_B_F_1857408493 0.003949875 -0.1975693
rs3131972-131_T_R_1857421833 1 -0.05999053
rs12562034-131_B_R_1858595326 0 0.6521336
rs12124819-131_B_R_1857380364 0 0.9319494
rs11240777-131_T_F_1857259998 0.9909273 -0.03275008
rs6681049-131_T_R_1858018399 0.9758316 -0.006761582
rs4970383-131_T_R_1857736617 0.5296318 -0.2900876
rs4475691-131_T_R_1857599365 1 -0.1396649
rs7537756-131_T_F_1857298910 0.02868414 -0.2437512
rs2272756-131_B_F_1857180676 0.9811656 0.1872411
rs17160698-131_T_R_1856941558 0.02321234 -0.1921145
rs3748597-131_T_R_1853475664 1 -0.2011998
rs13303106-131_T_F_1857538098 1 -0.02901935
rs28415373-131_T_R_1857337676 0.9930151 -0.1605158
rs28391282-131_T_F_1857337024 1 -0.1382854
rs13303118-131_B_F_1857538100 0 -0.13481
rs2341354-131_T_F_1858039701 1 -0.2334411
rs6665000-131_T_F_1857014860 0.04852946 -0.1785194
rs2341362-131_B_R_1857209587 1 0.2104714

Total number of rows: 600129

Table truncated, full table size 28006 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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