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Sample GSM2593147 Query DataSets for GSM2593147
Status Public on May 01, 2017
Title case8_N_SNP
Sample type genomic
 
Source name Normal colon tissue
Organism Homo sapiens
Characteristics case: 8
gender: Female
age: 76
primary tumor differentiation: moderately differentiated
tumor or normal colon location: sigmoid colon
tissue sample: normal colon tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 63
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.6963828
rs3094315-131_B_F_1857408493 0.01868031 -0.1793579
rs3131972-131_T_R_1857421833 1 -0.2663112
rs12562034-131_B_R_1858595326 0.01807517 0.3949737
rs12124819-131_B_R_1857380364 0.007158893 0.724539
rs11240777-131_T_F_1857259998 1 -0.07381541
rs6681049-131_T_R_1858018399 1 0.01320645
rs4970383-131_T_R_1857736617 0.5706841 0.125462
rs4475691-131_T_R_1857599365 1 -0.08652673
rs7537756-131_T_F_1857298910 0.01241415 -0.1548907
rs2272756-131_B_F_1857180676 1 0.1048966
rs17160698-131_T_R_1856941558 0.02025408 -0.1183889
rs3748597-131_T_R_1853475664 0.9913949 -0.03028914
rs13303106-131_T_F_1857538098 1 -0.01247514
rs28415373-131_T_R_1857337676 1 -0.2748025
rs28391282-131_T_F_1857337024 0.9893966 -0.1040567
rs13303118-131_B_F_1857538100 0.00701411 -0.1550711
rs2341354-131_T_F_1858039701 0.9897733 -0.02615359
rs6665000-131_T_F_1857014860 0.03506666 -0.1987652
rs2341362-131_B_R_1857209587 1 0.3550977

Total number of rows: 600129

Table truncated, full table size 27651 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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