NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2593144 Query DataSets for GSM2593144
Status Public on May 01, 2017
Title case7_T6_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 7
gender: Female
age: 49
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 60
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.872112
rs3094315-131_B_F_1857408493 0 -0.02305347
rs3131972-131_T_R_1857421833 1 0.01465307
rs12562034-131_B_R_1858595326 0 0.57078
rs12124819-131_B_R_1857380364 0.01456413 0.8977816
rs11240777-131_T_F_1857259998 0.9769366 -0.06125827
rs6681049-131_T_R_1858018399 1 0.007258297
rs4970383-131_T_R_1857736617 0.03262815 -0.2953487
rs4475691-131_T_R_1857599365 1 -0.01159147
rs7537756-131_T_F_1857298910 0.007263318 -0.07593226
rs2272756-131_B_F_1857180676 0.9921185 0.1815378
rs17160698-131_T_R_1856941558 0.02075111 -0.1185992
rs3748597-131_T_R_1853475664 0.9952742 0.08584668
rs13303106-131_T_F_1857538098 1 -0.1142884
rs28415373-131_T_R_1857337676 1 -0.01543986
rs28391282-131_T_F_1857337024 0.9782691 -0.1038905
rs13303118-131_B_F_1857538100 0 -0.1665568
rs2341354-131_T_F_1858039701 0.9947379 -0.09160454
rs6665000-131_T_F_1857014860 0.02239258 -0.1173075
rs2341362-131_B_R_1857209587 1 0.3122921

Total number of rows: 600129

Table truncated, full table size 27829 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap