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Sample GSM2593140 Query DataSets for GSM2593140
Status Public on May 01, 2017
Title case7_N_SNP
Sample type genomic
 
Source name Normal colon tissue
Organism Homo sapiens
Characteristics case: 7
gender: Female
age: 49
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: rectum
tissue sample: normal colon tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 56
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.8048484
rs3094315-131_B_F_1857408493 0.007835351 -0.1193878
rs3131972-131_T_R_1857421833 1 0.03218213
rs12562034-131_B_R_1858595326 0.008374886 0.6820981
rs12124819-131_B_R_1857380364 0 0.8659577
rs11240777-131_T_F_1857259998 1 -0.01321313
rs6681049-131_T_R_1858018399 1 0.01393326
rs4970383-131_T_R_1857736617 0.07306518 -0.3712363
rs4475691-131_T_R_1857599365 1 -0.09562263
rs7537756-131_T_F_1857298910 0.005142633 -0.1831825
rs2272756-131_B_F_1857180676 0.9962837 0.1889893
rs17160698-131_T_R_1856941558 0.03056974 -0.1564357
rs3748597-131_T_R_1853475664 1 0.05982369
rs13303106-131_T_F_1857538098 1 -0.1603919
rs28415373-131_T_R_1857337676 0.9746152 -0.1022779
rs28391282-131_T_F_1857337024 0.9860365 -0.1421043
rs13303118-131_B_F_1857538100 0.000337418 -0.1447776
rs2341354-131_T_F_1858039701 0.9941186 -0.04842278
rs6665000-131_T_F_1857014860 0.05128525 -0.1003904
rs2341362-131_B_R_1857209587 1 0.3085718

Total number of rows: 600129

Table truncated, full table size 27912 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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