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Sample GSM2593138 Query DataSets for GSM2593138
Status Public on May 01, 2017
Title case6_T7_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 6
gender: Female
age: 66
primary tumor differentiation: moderately differentiated
tumor or normal colon location: sigmoid colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 54
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.7407207
rs3094315-131_B_F_1857408493 0.0257789 -0.2215017
rs3131972-131_T_R_1857421833 1 -0.1670007
rs12562034-131_B_R_1858595326 1 0.07565231
rs12124819-131_B_R_1857380364 0 0.6896409
rs11240777-131_T_F_1857259998 0.9898744 -0.04204229
rs6681049-131_T_R_1858018399 0.9942086 -0.136566
rs4970383-131_T_R_1857736617 1 -0.1074525
rs4475691-131_T_R_1857599365 1 -0.1978757
rs7537756-131_T_F_1857298910 0 -0.2209142
rs2272756-131_B_F_1857180676 0.962359 0.09333728
rs17160698-131_T_R_1856941558 0.03004394 -0.1632303
rs3748597-131_T_R_1853475664 0.999585 -0.06713647
rs13303106-131_T_F_1857538098 1 -0.1495189
rs28415373-131_T_R_1857337676 0.979054 -0.09861389
rs28391282-131_T_F_1857337024 0.006249129 -0.1338126
rs13303118-131_B_F_1857538100 0 -0.1970381
rs2341354-131_T_F_1858039701 1 -0.1464766
rs6665000-131_T_F_1857014860 0.01475781 -0.2930783
rs2341362-131_B_R_1857209587 1 0.2527481

Total number of rows: 600129

Table truncated, full table size 27840 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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