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Sample GSM2593135 Query DataSets for GSM2593135
Status Public on May 01, 2017
Title case6_T2_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 6
gender: Female
age: 66
primary tumor differentiation: moderately differentiated
tumor or normal colon location: sigmoid colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 51
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.0006426 0.4478886
rs3094315-131_B_F_1857408493 0.001397507 -0.1978013
rs3131972-131_T_R_1857421833 1 -0.08449066
rs12562034-131_B_R_1858595326 1 0.1304964
rs12124819-131_B_R_1857380364 0 0.8361905
rs11240777-131_T_F_1857259998 1 -0.03684179
rs6681049-131_T_R_1858018399 0.9958874 -0.04438485
rs4970383-131_T_R_1857736617 1 -0.02714954
rs4475691-131_T_R_1857599365 1 -0.1216542
rs7537756-131_T_F_1857298910 0.03364098 -0.09665421
rs2272756-131_B_F_1857180676 0.9811782 0.03210426
rs17160698-131_T_R_1856941558 0.002774211 -0.1796549
rs3748597-131_T_R_1853475664 0.9753911 -0.09726636
rs13303106-131_T_F_1857538098 0.9847669 -0.1681768
rs28415373-131_T_R_1857337676 0.9842923 -0.1255309
rs28391282-131_T_F_1857337024 0.01455294 -0.07370156
rs13303118-131_B_F_1857538100 0.000172324 -0.1261186
rs2341354-131_T_F_1858039701 1 -0.2067316
rs6665000-131_T_F_1857014860 0.03274776 -0.353006
rs2341362-131_B_R_1857209587 1 0.1870468

Total number of rows: 600129

Table truncated, full table size 27741 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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