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Sample GSM2593132 Query DataSets for GSM2593132
Status Public on May 01, 2017
Title case5_T8_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 5
gender: Male
age: 69
primary tumor differentiation: well differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 48
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.7289633
rs3094315-131_B_F_1857408493 0.5374746 -0.1722802
rs3131972-131_T_R_1857421833 0.5730423 -0.06367891
rs12562034-131_B_R_1858595326 0.9964722 0.2094632
rs12124819-131_B_R_1857380364 0 0.7592798
rs11240777-131_T_F_1857259998 0.5356045 -0.03802516
rs6681049-131_T_R_1858018399 1 0.0490176
rs4970383-131_T_R_1857736617 0.5857706 0.1698894
rs4475691-131_T_R_1857599365 0.5804457 -0.08522666
rs7537756-131_T_F_1857298910 0.4749996 -0.2050123
rs2272756-131_B_F_1857180676 1 0.1006968
rs17160698-131_T_R_1856941558 0.02148971 -0.1332155
rs3748597-131_T_R_1853475664 1 -0.346885
rs13303106-131_T_F_1857538098 0.9787354 -0.212142
rs28415373-131_T_R_1857337676 0.9879895 -0.245411
rs28391282-131_T_F_1857337024 0.9831829 0.04967641
rs13303118-131_B_F_1857538100 0.9877549 -0.1015518
rs2341354-131_T_F_1858039701 0.5441771 -0.06524056
rs6665000-131_T_F_1857014860 0.02561374 -0.1934205
rs2341362-131_B_R_1857209587 1 0.2518736

Total number of rows: 600129

Table truncated, full table size 27850 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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