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Sample GSM2593130 Query DataSets for GSM2593130
Status Public on May 01, 2017
Title case5_T5_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 5
gender: Male
age: 69
primary tumor differentiation: well differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 46
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.8183218
rs3094315-131_B_F_1857408493 0.5714922 -0.1544828
rs3131972-131_T_R_1857421833 0.5203227 -0.2486238
rs12562034-131_B_R_1858595326 1 0.2730427
rs12124819-131_B_R_1857380364 0.003015718 0.7749608
rs11240777-131_T_F_1857259998 0.4961203 -0.08305159
rs6681049-131_T_R_1858018399 0.9658753 0.03665071
rs4970383-131_T_R_1857736617 0.537712 -0.08670041
rs4475691-131_T_R_1857599365 0.532838 -0.1825612
rs7537756-131_T_F_1857298910 0.5351472 -0.09823864
rs2272756-131_B_F_1857180676 1 -0.08812292
rs17160698-131_T_R_1856941558 0.02131152 0.005167755
rs3748597-131_T_R_1853475664 0.9946539 -0.05673346
rs13303106-131_T_F_1857538098 1 -0.06631213
rs28415373-131_T_R_1857337676 0.9785695 -0.02087777
rs28391282-131_T_F_1857337024 0.9666936 0.03480417
rs13303118-131_B_F_1857538100 0.987187 -0.001302669
rs2341354-131_T_F_1858039701 0.5235894 -0.06185369
rs6665000-131_T_F_1857014860 0.004548207 -0.1711677
rs2341362-131_B_R_1857209587 1 0.1061763

Total number of rows: 600129

Table truncated, full table size 27807 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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