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Sample GSM2593129 Query DataSets for GSM2593129
Status Public on May 01, 2017
Title case5_T3_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 5
gender: Male
age: 69
primary tumor differentiation: well differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 45
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.6778165
rs3094315-131_B_F_1857408493 0.5934767 -0.1475165
rs3131972-131_T_R_1857421833 0.5135757 -0.4247533
rs12562034-131_B_R_1858595326 1 0.2239286
rs12124819-131_B_R_1857380364 0 0.9344654
rs11240777-131_T_F_1857259998 0.5083931 -0.0061034
rs6681049-131_T_R_1858018399 0.9920213 0.008397503
rs4970383-131_T_R_1857736617 0.5395454 -0.05418024
rs4475691-131_T_R_1857599365 0.5551372 -0.1289679
rs7537756-131_T_F_1857298910 0.4743147 -0.123729
rs2272756-131_B_F_1857180676 1 0.1130959
rs17160698-131_T_R_1856941558 0.02094539 -0.218911
rs3748597-131_T_R_1853475664 1 -0.1299393
rs13303106-131_T_F_1857538098 0.9992778 -0.0971076
rs28415373-131_T_R_1857337676 1 -0.02216844
rs28391282-131_T_F_1857337024 0.9998689 0.09115739
rs13303118-131_B_F_1857538100 0.9912789 -0.1569882
rs2341354-131_T_F_1858039701 0.5178474 -0.0911941
rs6665000-131_T_F_1857014860 0.01364675 -0.1401199
rs2341362-131_B_R_1857209587 1 0.3224933

Total number of rows: 600129

Table truncated, full table size 27556 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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