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Sample GSM2593128 Query DataSets for GSM2593128
Status Public on May 01, 2017
Title case5_T2_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 5
gender: Male
age: 69
primary tumor differentiation: well differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 44
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.7121297
rs3094315-131_B_F_1857408493 0.5582035 -0.2439028
rs3131972-131_T_R_1857421833 0.5383102 -0.3871702
rs12562034-131_B_R_1858595326 1 0.1253039
rs12124819-131_B_R_1857380364 0 0.8514083
rs11240777-131_T_F_1857259998 0.4943435 0.06169272
rs6681049-131_T_R_1858018399 1 0.04081712
rs4970383-131_T_R_1857736617 0.5924426 0.1440573
rs4475691-131_T_R_1857599365 0.5311229 -0.2877822
rs7537756-131_T_F_1857298910 0.4619923 -0.03927127
rs2272756-131_B_F_1857180676 1 0.092985
rs17160698-131_T_R_1856941558 0.007939721 -0.1429247
rs3748597-131_T_R_1853475664 1 -0.1181597
rs13303106-131_T_F_1857538098 0.9981065 -0.1036574
rs28415373-131_T_R_1857337676 0.9923127 -0.1579474
rs28391282-131_T_F_1857337024 0.9892657 -0.04525114
rs13303118-131_B_F_1857538100 0.9812267 -0.08924767
rs2341354-131_T_F_1858039701 0.4901714 -0.04164854
rs6665000-131_T_F_1857014860 0.03385706 -0.2304067
rs2341362-131_B_R_1857209587 1 0.2205785

Total number of rows: 600129

Table truncated, full table size 27673 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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