NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2593127 Query DataSets for GSM2593127
Status Public on May 01, 2017
Title case5_T1_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 5
gender: Male
age: 69
primary tumor differentiation: well differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 43
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.6814628
rs3094315-131_B_F_1857408493 0.5636227 -0.1718918
rs3131972-131_T_R_1857421833 0.5244138 -0.2915154
rs12562034-131_B_R_1858595326 0.996817 0.167842
rs12124819-131_B_R_1857380364 0 0.8834985
rs11240777-131_T_F_1857259998 0.4817802 0.05374247
rs6681049-131_T_R_1858018399 0.9926429 -0.001352589
rs4970383-131_T_R_1857736617 0.5434151 0.1624055
rs4475691-131_T_R_1857599365 0.5453827 -0.2135621
rs7537756-131_T_F_1857298910 0.4804401 -0.09488481
rs2272756-131_B_F_1857180676 0.9966607 0.1631294
rs17160698-131_T_R_1856941558 0.01532641 -0.0860815
rs3748597-131_T_R_1853475664 0.9727922 -0.07933076
rs13303106-131_T_F_1857538098 1 -0.0944402
rs28415373-131_T_R_1857337676 1 -0.06061009
rs28391282-131_T_F_1857337024 0.9774737 0.2062532
rs13303118-131_B_F_1857538100 0.986938 -0.1151935
rs2341354-131_T_F_1858039701 0.5308705 -0.04389792
rs6665000-131_T_F_1857014860 0.02869031 -0.1928364
rs2341362-131_B_R_1857209587 1 0.2648271

Total number of rows: 600129

Table truncated, full table size 27659 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap