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Sample GSM2593123 Query DataSets for GSM2593123
Status Public on May 01, 2017
Title case4_T5_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 4
gender: Male
age: 61
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: rectum
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 39
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.003177544 0.587155
rs3094315-131_B_F_1857408493 0.5310197 0.0929792
rs3131972-131_T_R_1857421833 0.4797575 -0.3142416
rs12562034-131_B_R_1858595326 1 0.3377166
rs12124819-131_B_R_1857380364 0 0.94186
rs11240777-131_T_F_1857259998 0.4837981 -0.007733078
rs6681049-131_T_R_1858018399 0.9709448 -0.01295445
rs4970383-131_T_R_1857736617 0.5606091 0.3196844
rs4475691-131_T_R_1857599365 0.4530368 0.05743801
rs7537756-131_T_F_1857298910 0.4839805 0.01116838
rs2272756-131_B_F_1857180676 0.5158698 0.135327
rs17160698-131_T_R_1856941558 0.01257127 -0.1459326
rs3748597-131_T_R_1853475664 1 0.01548243
rs13303106-131_T_F_1857538098 0.5509005 -0.08327842
rs28415373-131_T_R_1857337676 1 -0.06387799
rs28391282-131_T_F_1857337024 0.5464361 -0.02317536
rs13303118-131_B_F_1857538100 0.4506523 -0.07490288
rs2341354-131_T_F_1858039701 0.5269413 -0.08710053
rs6665000-131_T_F_1857014860 0 -0.3301089
rs2341362-131_B_R_1857209587 0.9920484 0.1897115

Total number of rows: 600129

Table truncated, full table size 27699 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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