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Sample GSM2593120 Query DataSets for GSM2593120
Status Public on May 01, 2017
Title case4_N_SNP
Sample type genomic
 
Source name Normal colon tissue
Organism Homo sapiens
Characteristics case: 4
gender: Male
age: 61
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: rectum
tissue sample: normal colon tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 36
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.6810923
rs3094315-131_B_F_1857408493 0.544903 0.02084637
rs3131972-131_T_R_1857421833 0.5231668 -0.3754219
rs12562034-131_B_R_1858595326 1 0.2803494
rs12124819-131_B_R_1857380364 0 0.9679369
rs11240777-131_T_F_1857259998 0.5087371 0.04318035
rs6681049-131_T_R_1858018399 1 0.0221375
rs4970383-131_T_R_1857736617 0.6329442 0.4783798
rs4475691-131_T_R_1857599365 0.5250683 0.1138967
rs7537756-131_T_F_1857298910 0.4756956 0.0562828
rs2272756-131_B_F_1857180676 0.4826546 0.1438559
rs17160698-131_T_R_1856941558 0 -0.02774359
rs3748597-131_T_R_1853475664 0.99135 0.1137852
rs13303106-131_T_F_1857538098 0.5418166 -0.08735996
rs28415373-131_T_R_1857337676 1 -0.09123303
rs28391282-131_T_F_1857337024 0.5889071 -0.159185
rs13303118-131_B_F_1857538100 0.4377566 -0.1110291
rs2341354-131_T_F_1858039701 0.5358191 0.04513889
rs6665000-131_T_F_1857014860 0.01617746 -0.1450963
rs2341362-131_B_R_1857209587 1 0.2966921

Total number of rows: 600129

Table truncated, full table size 27683 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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