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Sample GSM2593118 Query DataSets for GSM2593118
Status Public on May 01, 2017
Title case3_R_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 34
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.001771127 -0.03638403
rs3094315-131_B_F_1857408493 0 0.5628557
rs3131972-131_T_R_1857421833 0.4751855 0.301443
rs12562034-131_B_R_1858595326 0.6799728 0.07297144
rs12124819-131_B_R_1857380364 0 0.1232269
rs11240777-131_T_F_1857259998 0.7049649 0.2344595
rs6681049-131_T_R_1858018399 0.7036442 0.4225096
rs4970383-131_T_R_1857736617 0.6932676 0.874795
rs4475691-131_T_R_1857599365 0.9965041 -0.09808732
rs7537756-131_T_F_1857298910 0.000793185 0.3463317
rs2272756-131_B_F_1857180676 0.9388092 0.3576503
rs17160698-131_T_R_1856941558 0.01455056 -0.01197553
rs3748597-131_T_R_1853475664 1 0.2479229
rs13303106-131_T_F_1857538098 0.3366755 0.5821925
rs28415373-131_T_R_1857337676 0.9784321 0.3908015
rs28391282-131_T_F_1857337024 0.346161 0.1888953
rs13303118-131_B_F_1857538100 0.01522896 -0.1610204
rs2341354-131_T_F_1858039701 0.9988036 -0.0869953
rs6665000-131_T_F_1857014860 0 0.3469327
rs2341362-131_B_R_1857209587 0.9935453 -0.0709701

Total number of rows: 600129

Table truncated, full table size 28184 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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