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Sample GSM2593116 Query DataSets for GSM2593116
Status Public on May 01, 2017
Title case3_po3_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 32
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.1081625
rs3094315-131_B_F_1857408493 0.000266831 0.5209325
rs3131972-131_T_R_1857421833 0.4562225 0.172314
rs12562034-131_B_R_1858595326 0.6436837 0.2108543
rs12124819-131_B_R_1857380364 0 0.2838658
rs11240777-131_T_F_1857259998 0.705909 0.1716383
rs6681049-131_T_R_1858018399 0.6664628 0.3832517
rs4970383-131_T_R_1857736617 0.6906958 0.8118328
rs4475691-131_T_R_1857599365 0.9948395 0.1006208
rs7537756-131_T_F_1857298910 0 0.4757326
rs2272756-131_B_F_1857180676 1 0.4121515
rs17160698-131_T_R_1856941558 0.01247295 0.04697959
rs3748597-131_T_R_1853475664 0.9856839 0.2841439
rs13303106-131_T_F_1857538098 0.3481459 0.6764711
rs28415373-131_T_R_1857337676 1 0.4617351
rs28391282-131_T_F_1857337024 0.3851799 0.1483669
rs13303118-131_B_F_1857538100 0.01827604 -0.1116167
rs2341354-131_T_F_1858039701 1 0.1079164
rs6665000-131_T_F_1857014860 0 0.5421788
rs2341362-131_B_R_1857209587 0.9933429 0.1051678

Total number of rows: 600129

Table truncated, full table size 28382 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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