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Sample GSM2593115 Query DataSets for GSM2593115
Status Public on May 01, 2017
Title case3_po2_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 31
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.01533176 0.0883483
rs3094315-131_B_F_1857408493 0.002505867 0.6514042
rs3131972-131_T_R_1857421833 0.4944488 0.2517255
rs12562034-131_B_R_1858595326 0.707696 0.3676842
rs12124819-131_B_R_1857380364 0 0.1768599
rs11240777-131_T_F_1857259998 0.7319683 0.2185674
rs6681049-131_T_R_1858018399 0.7148478 0.2648384
rs4970383-131_T_R_1857736617 0.7079529 0.8758587
rs4475691-131_T_R_1857599365 0.9938624 0.1432878
rs7537756-131_T_F_1857298910 0 0.4857474
rs2272756-131_B_F_1857180676 0.9824177 0.3889072
rs17160698-131_T_R_1856941558 0.01309768 0.03006106
rs3748597-131_T_R_1853475664 0.997988 0.2526309
rs13303106-131_T_F_1857538098 0.3287719 0.7195435
rs28415373-131_T_R_1857337676 0.9865274 0.3998137
rs28391282-131_T_F_1857337024 0.3600359 0.2052211
rs13303118-131_B_F_1857538100 0.005738907 -0.215704
rs2341354-131_T_F_1858039701 0.9975667 0.009589115
rs6665000-131_T_F_1857014860 0 0.4708597
rs2341362-131_B_R_1857209587 0.9914675 0.02671558

Total number of rows: 600129

Table truncated, full table size 28396 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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