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Sample GSM2593113 Query DataSets for GSM2593113
Status Public on May 01, 2017
Title case3_O_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 29
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 -0.04834639
rs3094315-131_B_F_1857408493 0 0.4723497
rs3131972-131_T_R_1857421833 0.4889292 0.1863358
rs12562034-131_B_R_1858595326 0.7167302 0.3429231
rs12124819-131_B_R_1857380364 0 0.1949394
rs11240777-131_T_F_1857259998 0.7054627 0.2316375
rs6681049-131_T_R_1858018399 0.7535524 0.2338291
rs4970383-131_T_R_1857736617 0.6201736 0.7193011
rs4475691-131_T_R_1857599365 0.9733818 0.06886731
rs7537756-131_T_F_1857298910 0 0.3255547
rs2272756-131_B_F_1857180676 0.9414694 0.2824983
rs17160698-131_T_R_1856941558 0.007714233 0.0197843
rs3748597-131_T_R_1853475664 0.9955423 0.2200067
rs13303106-131_T_F_1857538098 0.3380137 0.5175324
rs28415373-131_T_R_1857337676 0.9914623 0.3791326
rs28391282-131_T_F_1857337024 0.3415957 0.1314061
rs13303118-131_B_F_1857538100 0.006862258 -0.09105634
rs2341354-131_T_F_1858039701 0.9867246 0.05881488
rs6665000-131_T_F_1857014860 0.002648485 0.3122066
rs2341362-131_B_R_1857209587 0.9844412 0.1616075

Total number of rows: 600129

Table truncated, full table size 28450 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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