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Sample GSM2593109 Query DataSets for GSM2593109
Status Public on May 01, 2017
Title case3_I_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 25
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.005175316 -0.1656675
rs3094315-131_B_F_1857408493 0 0.6215841
rs3131972-131_T_R_1857421833 0.5074956 0.2991107
rs12562034-131_B_R_1858595326 0.7692879 0.4105299
rs12124819-131_B_R_1857380364 0 0.06752644
rs11240777-131_T_F_1857259998 0.6822268 0.1359165
rs6681049-131_T_R_1858018399 0.6677389 0.3634544
rs4970383-131_T_R_1857736617 0.7308363 0.9564995
rs4475691-131_T_R_1857599365 0.984498 0.1087119
rs7537756-131_T_F_1857298910 0 0.4476895
rs2272756-131_B_F_1857180676 0.9893028 0.4766493
rs17160698-131_T_R_1856941558 0.01132172 0.1062417
rs3748597-131_T_R_1853475664 1 0.2444142
rs13303106-131_T_F_1857538098 0.2907885 0.7182044
rs28415373-131_T_R_1857337676 1 0.4625421
rs28391282-131_T_F_1857337024 0.3375167 0.1441631
rs13303118-131_B_F_1857538100 0.004834715 -0.08500563
rs2341354-131_T_F_1858039701 0.9975514 0.03217608
rs6665000-131_T_F_1857014860 0 0.4537418
rs2341362-131_B_R_1857209587 0.9895966 0.1486451

Total number of rows: 600129

Table truncated, full table size 28238 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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