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Sample GSM2593108 Query DataSets for GSM2593108
Status Public on May 01, 2017
Title case3_H_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 24
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.02490846 0.1297729
rs3094315-131_B_F_1857408493 0 0.5249589
rs3131972-131_T_R_1857421833 0.4200712 0.176627
rs12562034-131_B_R_1858595326 0.5595588 0.3752276
rs12124819-131_B_R_1857380364 0 0.1371178
rs11240777-131_T_F_1857259998 0.655807 0.07057074
rs6681049-131_T_R_1858018399 0.6902192 0.3492468
rs4970383-131_T_R_1857736617 0.6653624 0.6782554
rs4475691-131_T_R_1857599365 0.9904735 0.1467742
rs7537756-131_T_F_1857298910 0 0.3973475
rs2272756-131_B_F_1857180676 1 0.3541837
rs17160698-131_T_R_1856941558 0.01552631 0.09443566
rs3748597-131_T_R_1853475664 0.9923483 0.2487438
rs13303106-131_T_F_1857538098 0.3665321 0.6399726
rs28415373-131_T_R_1857337676 1 0.2815906
rs28391282-131_T_F_1857337024 0.3838979 0.02966552
rs13303118-131_B_F_1857538100 0.004561631 -0.1123342
rs2341354-131_T_F_1858039701 0.997798 -0.02015574
rs6665000-131_T_F_1857014860 0 0.3690774
rs2341362-131_B_R_1857209587 0.9949453 0.1033059

Total number of rows: 600129

Table truncated, full table size 28285 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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