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Sample GSM2593106 Query DataSets for GSM2593106
Status Public on May 01, 2017
Title case3_G1_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 22
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.001364127 -0.0094045
rs3094315-131_B_F_1857408493 0 0.7310449
rs3131972-131_T_R_1857421833 0.357975 0.3363225
rs12562034-131_B_R_1858595326 0.4617389 0.6050825
rs12124819-131_B_R_1857380364 0 0.3731284
rs11240777-131_T_F_1857259998 0.6215652 0.1328535
rs6681049-131_T_R_1858018399 0.6350083 0.3899028
rs4970383-131_T_R_1857736617 0.6084633 1.062933
rs4475691-131_T_R_1857599365 0.9971783 0.160989
rs7537756-131_T_F_1857298910 0 0.4251835
rs2272756-131_B_F_1857180676 1 0.4585154
rs17160698-131_T_R_1856941558 0.00658107 -0.01435546
rs3748597-131_T_R_1853475664 0.9931101 0.4083332
rs13303106-131_T_F_1857538098 0.4613503 0.6858752
rs28415373-131_T_R_1857337676 0.991697 0.5256349
rs28391282-131_T_F_1857337024 0.4726208 0.1831831
rs13303118-131_B_F_1857538100 0.005687768 -0.07548023
rs2341354-131_T_F_1858039701 0.9926926 0.1287595
rs6665000-131_T_F_1857014860 0 0.7374883
rs2341362-131_B_R_1857209587 1 0.2809593

Total number of rows: 600129

Table truncated, full table size 28252 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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