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Sample GSM2593100 Query DataSets for GSM2593100
Status Public on May 01, 2017
Title case3_C_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 16
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 -0.04351714
rs3094315-131_B_F_1857408493 0.000397592 0.6718335
rs3131972-131_T_R_1857421833 0.3034346 0.2717934
rs12562034-131_B_R_1858595326 0.3441209 0.8477362
rs12124819-131_B_R_1857380364 0.004327456 0.2304441
rs11240777-131_T_F_1857259998 0.6026103 0.268148
rs6681049-131_T_R_1858018399 0.5347466 0.4375959
rs4970383-131_T_R_1857736617 0.5459908 1.060106
rs4475691-131_T_R_1857599365 0.9949302 0.1932656
rs7537756-131_T_F_1857298910 0 0.4396205
rs2272756-131_B_F_1857180676 1 0.4354735
rs17160698-131_T_R_1856941558 0.003758422 0.09813331
rs3748597-131_T_R_1853475664 0.9923859 0.4015447
rs13303106-131_T_F_1857538098 0.4774499 0.7675875
rs28415373-131_T_R_1857337676 0.9898058 0.3349293
rs28391282-131_T_F_1857337024 0.5657285 0.2711625
rs13303118-131_B_F_1857538100 0.008477181 -0.1734648
rs2341354-131_T_F_1858039701 1 -0.002310889
rs6665000-131_T_F_1857014860 0 0.512921
rs2341362-131_B_R_1857209587 0.9983066 0.1759536

Total number of rows: 600129

Table truncated, full table size 28269 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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