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Sample GSM2593099 Query DataSets for GSM2593099
Status Public on May 01, 2017
Title case3_B_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 15
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.001265889 -0.147329
rs3094315-131_B_F_1857408493 0 0.6525093
rs3131972-131_T_R_1857421833 0.3858859 0.3506608
rs12562034-131_B_R_1858595326 0.5411149 0.1909179
rs12124819-131_B_R_1857380364 0.008114734 0.1944655
rs11240777-131_T_F_1857259998 0.6250103 0.1864959
rs6681049-131_T_R_1858018399 0.563386 0.4352676
rs4970383-131_T_R_1857736617 0.6314151 0.7140064
rs4475691-131_T_R_1857599365 0.9915208 0.1380982
rs7537756-131_T_F_1857298910 0 0.3652614
rs2272756-131_B_F_1857180676 1 0.4557929
rs17160698-131_T_R_1856941558 0 0.10059
rs3748597-131_T_R_1853475664 0.9987752 0.3366109
rs13303106-131_T_F_1857538098 0.3863936 0.7617016
rs28415373-131_T_R_1857337676 0.9989827 0.3516325
rs28391282-131_T_F_1857337024 0.4270886 0.07261611
rs13303118-131_B_F_1857538100 0.008319166 -0.09445599
rs2341354-131_T_F_1858039701 1 0.1850472
rs6665000-131_T_F_1857014860 0 0.5097004
rs2341362-131_B_R_1857209587 0.9853327 0.1772673

Total number of rows: 600129

Table truncated, full table size 28242 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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