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Sample GSM2593098 Query DataSets for GSM2593098
Status Public on May 01, 2017
Title case3_normal_SNP
Sample type genomic
 
Source name Normal colon tissue
Organism Homo sapiens
Characteristics case: 3
gender: Male
age: 82
primary tumor differentiation: well to moderately differentiated
tumor or normal colon location: descending colon
tissue sample: normal colon tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 14
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 0.06588727
rs3094315-131_B_F_1857408493 0 0.5677258
rs3131972-131_T_R_1857421833 0.3655279 0.2417051
rs12562034-131_B_R_1858595326 0.5367789 0.5641782
rs12124819-131_B_R_1857380364 0.01197806 0.3367471
rs11240777-131_T_F_1857259998 0.6344656 0.09208367
rs6681049-131_T_R_1858018399 0.6416636 0.2999733
rs4970383-131_T_R_1857736617 0.5916643 0.9429603
rs4475691-131_T_R_1857599365 0.9894006 0.1148046
rs7537756-131_T_F_1857298910 0 0.4405653
rs2272756-131_B_F_1857180676 0.9912164 0.366186
rs17160698-131_T_R_1856941558 0.005631903 -0.03726953
rs3748597-131_T_R_1853475664 1 0.2056602
rs13303106-131_T_F_1857538098 0.4416213 0.639387
rs28415373-131_T_R_1857337676 0.9875612 0.4254229
rs28391282-131_T_F_1857337024 0.4733005 0.03149139
rs13303118-131_B_F_1857538100 0.004664687 -0.1975631
rs2341354-131_T_F_1858039701 0.9976091 0.04745462
rs6665000-131_T_F_1857014860 0 0.7489011
rs2341362-131_B_R_1857209587 1 0.1305743

Total number of rows: 600129

Table truncated, full table size 28304 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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