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Sample GSM2593097 Query DataSets for GSM2593097
Status Public on May 01, 2017
Title case2_Liver3_SNP
Sample type genomic
 
Source name Liver metastasis tumor tissue
Organism Homo sapiens
Characteristics case: 2
gender: Male
age: 81
primary tumor differentiation: well differentiated
tumor or normal colon location: Liver
tissue sample: liver metastasis tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 13
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0.01651968 -0.1695201
rs3094315-131_B_F_1857408493 0.4877937 0.3592375
rs3131972-131_T_R_1857421833 0.4874517 0.1228575
rs12562034-131_B_R_1858595326 1 0.4416162
rs12124819-131_B_R_1857380364 0 0.1739205
rs11240777-131_T_F_1857259998 0.4875791 0.1770613
rs6681049-131_T_R_1858018399 0.9901842 0.2067884
rs4970383-131_T_R_1857736617 0.4245875 0.7210707
rs4475691-131_T_R_1857599365 0.4813432 0.07466365
rs7537756-131_T_F_1857298910 0.4287149 0.4808633
rs2272756-131_B_F_1857180676 1 0.6005666
rs17160698-131_T_R_1856941558 0.01428663 0.03550172
rs3748597-131_T_R_1853475664 0.9954605 0.3169012
rs13303106-131_T_F_1857538098 0.9915398 0.5266771
rs28415373-131_T_R_1857337676 0.9820651 0.4367638
rs28391282-131_T_F_1857337024 0.4770144 0.1225475
rs13303118-131_B_F_1857538100 0.5075315 -0.09855128
rs2341354-131_T_F_1858039701 0.5272576 0.09474314
rs6665000-131_T_F_1857014860 0 0.4414446
rs2341362-131_B_R_1857209587 0.9872867 0.2282856

Total number of rows: 600129

Table truncated, full table size 28136 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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