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Sample GSM2593089 Query DataSets for GSM2593089
Status Public on May 01, 2017
Title case2_E2_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 2
gender: Male
age: 81
primary tumor differentiation: well differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 5
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 -0.1524159
rs3094315-131_B_F_1857408493 0.4824826 0.36055
rs3131972-131_T_R_1857421833 0.4769682 0.2349843
rs12562034-131_B_R_1858595326 0.956642 0.5605599
rs12124819-131_B_R_1857380364 0 -0.1440097
rs11240777-131_T_F_1857259998 0.4743673 0.1894476
rs6681049-131_T_R_1858018399 0.9889063 0.2278689
rs4970383-131_T_R_1857736617 0.466356 0.599975
rs4475691-131_T_R_1857599365 0.4738189 0.1807543
rs7537756-131_T_F_1857298910 0.4312157 0.5453398
rs2272756-131_B_F_1857180676 1 0.5159968
rs17160698-131_T_R_1856941558 0.004805034 0.0621206
rs3748597-131_T_R_1853475664 0.96959 0.3804599
rs13303106-131_T_F_1857538098 1 0.4436489
rs28415373-131_T_R_1857337676 0.9774465 0.3388619
rs28391282-131_T_F_1857337024 0.5004475 0.1360838
rs13303118-131_B_F_1857538100 0.4616516 -0.09484578
rs2341354-131_T_F_1858039701 0.5234444 0.08673572
rs6665000-131_T_F_1857014860 0 0.6072476
rs2341362-131_B_R_1857209587 0.9867247 0.1870803

Total number of rows: 600129

Table truncated, full table size 28297 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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