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Sample GSM2593088 Query DataSets for GSM2593088
Status Public on May 01, 2017
Title case2_D3_SNP
Sample type genomic
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case: 2
gender: Male
age: 81
primary tumor differentiation: well differentiated
tumor or normal colon location: descending colon
tissue sample: primary colorectal tumor tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 4
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 -0.2380767
rs3094315-131_B_F_1857408493 0.4807217 0.3482407
rs3131972-131_T_R_1857421833 0.4546628 0.1403797
rs12562034-131_B_R_1858595326 0.9919554 0.3941036
rs12124819-131_B_R_1857380364 0 0.01209696
rs11240777-131_T_F_1857259998 0.4807796 0.08550131
rs6681049-131_T_R_1858018399 0.9957884 0.1131097
rs4970383-131_T_R_1857736617 0.397132 0.583654
rs4475691-131_T_R_1857599365 0.4915823 0.09007251
rs7537756-131_T_F_1857298910 0.4470885 0.4328046
rs2272756-131_B_F_1857180676 0.9844176 0.412494
rs17160698-131_T_R_1856941558 0.01110691 -0.1343925
rs3748597-131_T_R_1853475664 0.9925221 0.1921948
rs13303106-131_T_F_1857538098 1 0.4497357
rs28415373-131_T_R_1857337676 0.9779938 0.3413703
rs28391282-131_T_F_1857337024 0.5119157 0.1175648
rs13303118-131_B_F_1857538100 0.4906554 -0.06934675
rs2341354-131_T_F_1858039701 0.5227154 -0.06341768
rs6665000-131_T_F_1857014860 0 0.301091
rs2341362-131_B_R_1857209587 0.98037 -0.06480482

Total number of rows: 600129

Table truncated, full table size 28252 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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