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Sample GSM2593085 Query DataSets for GSM2593085
Status Public on May 01, 2017
Title case2_normal_SNP
Sample type genomic
 
Source name Normal colon tissue
Organism Homo sapiens
Characteristics case: 2
gender: Male
age: 81
primary tumor differentiation: well differentiated
tumor or normal colon location: descending colon
tissue sample: normal colon tissue
Extracted molecule genomic DNA
Extraction protocol Total DNA was isolated by standard procedures with Qiagen AllPrep DNA/RNA Mini Kit
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina iScan System according to the manufacturer's protocol
Description SAMPLE 1
Data processing Illumina's GenomeStudio software was used to obtain B allele frequencies (BAF) and log R ratios (LRR) from the raw output data.
 
Submission date May 01, 2017
Last update date May 01, 2017
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL18900
Series (2)
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma
GSE98385 SNP array data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE BAF
Log_R_Ratio

Data table
ID_REF VALUE Log_R_Ratio
rs4477212-131_B_R_1857599444 0 -0.1358756
rs3094315-131_B_F_1857408493 0.5040296 0.2325483
rs3131972-131_T_R_1857421833 0.4858604 0.04768975
rs12562034-131_B_R_1858595326 0.9479321 0.4224064
rs12124819-131_B_R_1857380364 0 0.117215
rs11240777-131_T_F_1857259998 0.4742468 0.02224538
rs6681049-131_T_R_1858018399 0.9972557 0.22024
rs4970383-131_T_R_1857736617 0.4217314 0.2028868
rs4475691-131_T_R_1857599365 0.4670146 0.05305037
rs7537756-131_T_F_1857298910 0.4572012 0.4461953
rs2272756-131_B_F_1857180676 1 0.497095
rs17160698-131_T_R_1856941558 0.005393812 0.05827982
rs3748597-131_T_R_1853475664 0.9954468 0.2608127
rs13303106-131_T_F_1857538098 1 0.4781795
rs28415373-131_T_R_1857337676 0.9977308 0.2493289
rs28391282-131_T_F_1857337024 0.4860021 0.1627681
rs13303118-131_B_F_1857538100 0.485779 -0.1387402
rs2341354-131_T_F_1858039701 0.5046503 -0.06896767
rs6665000-131_T_F_1857014860 0 0.6922842
rs2341362-131_B_R_1857209587 0.9909662 0.154307

Total number of rows: 600129

Table truncated, full table size 28146 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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