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Sample GSM248193 Query DataSets for GSM248193
Status Public on Dec 14, 2007
Title 3-30-07 Calprotectin-B T0
Sample type RNA
 
Source name S. aureus strain Newman, mid-log grown in Calprotectin treated RPMI medium
Organism Staphylococcus aureus subsp. aureus str. Newman
Characteristics S. aureus strain Newman, mid-log grown in Calprotectin treated RPMI medium
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Prep
Label biotin
Label protocol Affymetrix Antisense Prokaryotic
 
Hybridization protocol Affymetrix Antisense Prokaryotic
Scan protocol Affymetrix Antisense Prokaryotic
Description Biological replicate to 2-27-07 Calprotectin A T0
Data processing MAS5.0
 
Submission date Dec 10, 2007
Last update date Aug 14, 2011
Contact name Paul M Dunman
E-mail(s) [email protected]
Phone 402 559-7745
Fax 402 559-4077
URL http://dunmanlab.com
Organization name University of Nebraska Medical Center
Department Pathology and Microbiology
Street address 986495 Nebraska Medical Center
City Omaha
State/province NE
ZIP/Postal code 68198-6495
Country USA
 
Platform ID GPL1339
Series (1)
GSE9828 Characterization of Calprotectin treated medium

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL P, M, or A call
DETECTION P-VALUE Detection value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 0.461496 A 0.883908
AFFX-BioB-M_at 0.946773 A 0.824693
AFFX-BioB-3_at 0.192667 A 0.868868
AFFX-BioC-5_at 0.686901 A 0.645559
AFFX-BioC-3_at 0.338032 A 0.966347
AFFX-BioDn-5_at 0.14673 A 0.971554
AFFX-BioDn-3_at 0.870052 A 0.645596
AFFX-CreX-5_at 1.06567 A 0.455405
AFFX-CreX-3_at 0.169301 A 0.843353
AFFX-DapX-5_at 0.163051 A 0.957038
AFFX-DapX-M_at 0.113595 A 0.983368
AFFX-DapX-3_at 1.26861 A 0.514891
AFFX-LysX-5_at 0.115865 A 0.97819
AFFX-LysX-M_at 0.406346 A 0.645559
AFFX-LysX-3_at 0.18482 A 0.860559
AFFX-PheX-5_at 1.16413 A 0.544591
AFFX-PheX-M_at 1.73299 A 0.262791
AFFX-PheX-3_at 1.21498 A 0.699473
AFFX-ThrX-5_at 1.18915 A 0.559374
AFFX-ThrX-M_at 0.109338 A 0.998411

Total number of rows: 7775

Table truncated, full table size 280 Kbytes.




Supplementary file Size Download File type/resource
GSM248193.CEL.gz 1.0 Mb (ftp)(http) CEL
GSM248193.CHP.gz 56.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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