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Sample GSM248105 Query DataSets for GSM248105
Status Public on Jan 24, 2008
Title NA18853_B/NA10851
Sample type genomic
 
Channel 1
Source name NA18853_B
Organism Homo sapiens
Characteristics Coriell sample: NA18853_B
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18853
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label Cy5
Label protocol Agilent DNA labeling kit
 
Channel 2
Source name NA10851
Organism Homo sapiens
Characteristics Coriell Reference sample: NA10851
Biomaterial provider Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10851
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label Cy3
Label protocol Agilent DNA labeling kit
 
 
Hybridization protocol See manufacturer website: <http://www.chem.agilent.com/scripts/LiteraturePDF.asp?iWHID=52010>
Scan protocol Scanned on an Agilent G2505A Scanner
Description NA
Data processing Agilent Feature Extraction v9.1, default CGH parameters
 
Submission date Dec 10, 2007
Last update date Aug 14, 2011
Contact name Peter Tsang
E-mail(s) [email protected]
Phone 408-553-2917
Organization name Agilent Technologies
Department Agilent Labs
Street address 5301 Stevens Creek Blvd.
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL6251
Series (1)
GSE9831 The fine-scale and complex architecture of human copy number variation

Data table header descriptions
ID_REF
VALUE log(REDsignal/GREENsignal) per feature (processed signals used)
LogRatioError error of the log ratio calculated according to the error model chosen

Data table
ID_REF VALUE LogRatioError
1 0.039284 0.045227
2 0 0.45781
3 0 0.46083
4 0.12888 0.048883
5 0.033071 0.04619
6 0.097315 0.046829
7 0.034248 0.046644
8 -0.036537 0.046942
9 -0.039901 0.048208
10 -0.060826 0.047777
11 0.0091258 0.047539
12 0.026812 0.047883
13 -0.032678 0.049111
14 -0.058952 0.049046
15 0.093036 0.049898
16 -0.022072 0.049155
17 -0.024614 0.049117
18 -0.025204 0.049915
19 -0.002427 0.049558
20 0.083973 0.062138

Total number of rows: 243504

Table truncated, full table size 5902 Kbytes.




Supplementary file Size Download File type/resource
GSM248105.txt.gz 23.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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