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Sample GSM245160 Query DataSets for GSM245160
Status Public on Jun 23, 2008
Title Wistar Kyoto (WKY) rat diesel exposure rep 2
Sample type RNA
 
Source name left ventricular heart
Organism Rattus norvegicus
Characteristics strain: Wistar Kyoto (WKY)
stress: diesel
protocol: Wistar Kyoto (WKY) male rats (12-14 wks age) exposed whole body to 2.0 mg/m3 diesel emission particles for 6h/d, 5 d/wk for 4 wks.
tissue: left ventricular heart
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy columns
Label biotin
Label protocol Affymetrix labeling protocol
 
Hybridization protocol Affymetrix hybridization protocol
Scan protocol Affymetrix GCOS scanning protocol
Description Diesel emision particle exposure is linked to increases in cardiovascular effects. This effect is enhanced in individuals with pre-existing disease. Animal models of cardiovascular disease are used to study this susceptibility. The heart is rich in mitochondria, which produce high levels of free radicals, leading to inactivation of tricarboxylic acid cycle enzymes. We hypothesized that a 4-wk DEP inhalation would result in strain-related structural impairment of cardiac mitochondria and changes in these enzyme activities in WKY and SHR. Male rats (12-14 wks age) were exposed whole body to air or 0.5 or 2.0 mg/m3 DEP for 6h/d, 5 d/wk for 4 wks.
Data processing MAS 5.0
 
Submission date Nov 26, 2007
Last update date Aug 14, 2011
Contact name Urmila P Kodavanti
E-mail(s) [email protected]
Phone 919-541-4963
Fax 919-541-0026
Organization name USEPA
Department NHEERL, ETD
Lab B143-01
Street address 109 TW Alexander Drive
City Research Triangle Park
State/province NC
ZIP/Postal code 27711
Country USA
 
Platform ID GPL341
Series (1)
GSE9694 Differential susceptibility of Wistar Kyoto and spontaneously hypertensive rats to diesel exhaust particle exposure.

Data table header descriptions
ID_REF
VALUE signal value
ABS_CALL Affymetrix present, marginal or absent call
DETECTION P-VALUE P-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 240.812 P 0.0219019
AFFX-BioB-M_at 135.47 P 0.0103167
AFFX-BioB-3_at 119.814 A 0.139482
AFFX-BioC-5_at 448.685 P 0.000258358
AFFX-BioC-3_at 300.768 P 0.00010954
AFFX-BioDn-5_at 1103.11 P 0.000856509
AFFX-BioDn-3_at 2812.15 P 0.000581214
AFFX-CreX-5_at 5332.29 P 4.42873e-05
AFFX-CreX-3_at 6176.41 P 5.16732e-05
AFFX-DapX-5_at 38.6189 A 0.300606
AFFX-DapX-M_at 67.3685 A 0.102165
AFFX-DapX-3_at 9.54035 A 0.904333
AFFX-LysX-5_at 19.7769 A 0.617401
AFFX-LysX-M_at 15.6886 A 0.559354
AFFX-LysX-3_at 37.006 A 0.239063
AFFX-PheX-5_at 5.65985 A 0.794268
AFFX-PheX-M_at 6.26297 A 0.897835
AFFX-PheX-3_at 72.0728 A 0.275146
AFFX-ThrX-5_at 8.56588 A 0.824672
AFFX-ThrX-M_at 33.395 A 0.425962

Total number of rows: 15923

Table truncated, full table size 482 Kbytes.




Supplementary file Size Download File type/resource
GSM245160.CEL.gz 1.7 Mb (ftp)(http) CEL
GSM245160.CHP.gz 84.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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