NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2411012 Query DataSets for GSM2411012
Status Public on Dec 01, 2016
Title case3_D_RNA
Sample type RNA
 
Source name Primary colorectal tumor tissue
Organism Homo sapiens
Characteristics case id: case3
gender: Male
age: 82
tissue type: Primary colorectal tumor tissue
primary tumor defferentiation: well to moderately differentiated
tumor or normal colon location: descending colon
Extracted molecule total RNA
Extraction protocol Laser micro-dissection
Total RNA was isolated by standard procedures
Label Cy3
Label protocol not provided
 
Hybridization protocol Hybridization was carried out using the conditions specified in the Agilent Human Whole Genome Expression system.
Scan protocol Fluorescence intensities were determined with an Agilent DNA Microarray Scanner.
Data processing The gene expression profiles obtained from microarray data were quantile normalized.
 
Submission date Nov 30, 2016
Last update date Dec 01, 2016
Contact name RYUTARO UCHI
Organization name KYUSHUUNIVERSItY
Street address MAIDASHI3-1-1
City FUKUOKA
State/province FUKUOKA
ZIP/Postal code 812-8582
Country Japan
 
Platform ID GPL17077
Series (2)
GSE90708 Expression data of multi regional colorectal carcinoma
GSE90709 Methylation, expression, and SNP data of multi regional colorectal carcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalized signal intensity

Data table
ID_REF VALUE
A_23_P107801 2.368387006
A_21_P0004699 0.624682163
A_33_P3226800 0.856671222
A_33_P3264960 0.828348219
A_21_P0012973 0.719776922
A_21_P0004223 0.785419506
A_23_P110005 2.654523478
A_33_P3274678 0.705389628
A_19_P00331618 2.701946946
A_33_P3355739 0.85995093
A_33_P3333955 0.685951018
A_21_P0009042 0.755151292
A_33_P3422043 0.711157242
A_33_P3353330 0.667190285
A_23_P200143 1.284319247
A_33_P3295077 1.29290141
A_19_P00808033 1.930264656
A_21_P0006638 0.661130445
A_24_P125881 3.045760665
A_23_P429950 1.807579711

Total number of rows: 50683

Table truncated, full table size 1258 Kbytes.




Supplementary file Size Download File type/resource
GSM2411012_US22502544_253949411189_S01_GE1_1100_Jul11_2_3.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap