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Sample GSM2308658 Query DataSets for GSM2308658
Status Public on Oct 14, 2016
Title ChIP-seq from hindbrain (ENCLB008HIY)
Sample type SRA
 
Source name Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (10.5 days)
Organism Mus musculus
Characteristics antibody: H3K27me3
tissue_type: hindbrain
biomaterial_type: tissue
description: Hindbrain from 51 embryonic 10.5 day mice
biosample encode accession: ENCBS723QMZ (SAMN05733896)
age: 10.5 day
dev stage: embryonic
donor_id: ENCDO956IXV
Sex: pooled male and female
health state: healthy
lab: Len Pennacchio, LBNL
link: ENCBS723QMZ at ENCODE; https://www.encodeproject.org/ENCBS723QMZ/
link: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/18580e80-0907-4258-a412-46bcc37bd040/@@download/attachment/Ren%20Lab%20ENCODE%20Chromatin%20Immunoprecipitation%20Protocol%20MicroChIP.pdf
general protocol: https://www.encodeproject.org/documents/1fcaab50-6ca0-4778-88cb-5f6b85170d21/@@download/attachment/Ren%20Lab%20ENCODE%20Tissue%20Fixation%20and%20Sonication%20Protocol%20MicroChIP.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 4000
 
Description https://www.encodeproject.org/experiments/ENCSR984OHL/
***************
biological replicate number: 2
technical replicate number: 1,2,3
description: H3K27me3 ChIP-seq on embryonic 10.5 day mouse hindbrain
experiment encode accession: ENCSR984OHL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR191XBS
encode release date: 2016-07-19
lab: Bing Ren, UCSD
library encode accession: ENCLB008HIY
size range: 300-500
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Sep 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) [email protected]
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL21103
Series (1)
GSE86777 ChIP-seq from hindbrain (ENCSR984OHL)
Relations
BioSample SAMN05733896
SRA SRX2157072
Named Annotation GSM2308658_ENCFF558TTY_peaks_mm10.bed.gz
Named Annotation GSM2308658_ENCFF445MCH_signal_p-value_mm10.bigWig
Named Annotation GSM2308658_ENCFF034IJG_fold_change_over_control_mm10.bigWig

Supplementary file Size Download File type/resource
GSM2308658_ENCFF034IJG_fold_change_over_control_mm10.bigWig 978.1 Mb (ftp)(http) BIGWIG
GSM2308658_ENCFF162YVJ_peaks_mm10.bigBed 4.2 Mb (ftp)(http) BIGBED
GSM2308658_ENCFF445MCH_signal_p-value_mm10.bigWig 827.6 Mb (ftp)(http) BIGWIG
GSM2308658_ENCFF558TTY_peaks_mm10.bed.gz 1.8 Mb (ftp)(http) BED
GSM2308658_ENCLB008HIY_README.txt.gz 1.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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