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Sample GSM228117 Query DataSets for GSM228117
Status Public on Aug 20, 2011
Title P0*200_GPL97
Sample type RNA
 
Source name human myeloma cell P0*200_GPL97
Organism Homo sapiens
Characteristics human myeloma cell P0*200_GPL97
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit(50)
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard affymetrix protocol
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using GeneChip Scanner 3000
Description Gene expression data from myeloma patient before DEXA treatment
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 07, 2007
Last update date Aug 20, 2011
Contact name Yiming Zhou
E-mail(s) [email protected]
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL97
Series (1)
GSE8991 A Gene Expression-Based Risk Stratification Model for Newly Diagnosed Multiple Myeloma

Data table header descriptions
ID_REF probeset ID
VALUE normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1474.6 P
AFFX-BioB-M_at 1904.4 P
AFFX-BioB-3_at 784.6 P
AFFX-BioC-5_at 3480.2 P
AFFX-BioC-3_at 2400.5 P
AFFX-BioDn-5_at 3495.3 P
AFFX-BioDn-3_at 17116.6 P
AFFX-CreX-5_at 32945.4 P
AFFX-CreX-3_at 53399.4 P
AFFX-DapX-5_at 150.6 A
AFFX-DapX-M_at 194.4 A
AFFX-DapX-3_at 207.5 A
AFFX-LysX-5_at 77.7 A
AFFX-LysX-M_at 261.4 A
AFFX-LysX-3_at 178.7 A
AFFX-PheX-5_at 30.2 A
AFFX-PheX-M_at 17.9 A
AFFX-PheX-3_at 215.4 A
AFFX-ThrX-5_at 329.6 A
AFFX-ThrX-M_at 90.2 A

Total number of rows: 22645

Table truncated, full table size 404 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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