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Sample GSM228048 Query DataSets for GSM228048
Status Public on Aug 20, 2011
Title P0*684_GPL97
Sample type RNA
 
Source name human myeloma cell P0*684_GPL97
Organism Homo sapiens
Characteristics human myeloma cell P0*684_GPL97
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit(50)
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard affymetrix protocol
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using GeneChip Scanner 3000
Description Gene expression data from myeloma patient before DEXA treatment
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 07, 2007
Last update date Aug 20, 2011
Contact name Yiming Zhou
E-mail(s) [email protected]
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL97
Series (1)
GSE8991 A Gene Expression-Based Risk Stratification Model for Newly Diagnosed Multiple Myeloma

Data table header descriptions
ID_REF probeset ID
VALUE normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 730.3 P
AFFX-BioB-M_at 683.0 P
AFFX-BioB-3_at 315.4 A
AFFX-BioC-5_at 1850.7 P
AFFX-BioC-3_at 1456.2 P
AFFX-BioDn-5_at 1510.1 P
AFFX-BioDn-3_at 10430.5 P
AFFX-CreX-5_at 12663.4 P
AFFX-CreX-3_at 26550.1 P
AFFX-DapX-5_at 215.4 P
AFFX-DapX-M_at 224.4 A
AFFX-DapX-3_at 23.5 A
AFFX-LysX-5_at 72.1 A
AFFX-LysX-M_at 197.7 A
AFFX-LysX-3_at 119.8 A
AFFX-PheX-5_at 14.7 A
AFFX-PheX-M_at 28.1 A
AFFX-PheX-3_at 219.0 A
AFFX-ThrX-5_at 205.6 A
AFFX-ThrX-M_at 32.9 A

Total number of rows: 22645

Table truncated, full table size 404 Kbytes.




Supplementary file Size Download File type/resource
GSM228048_U133B-P0684-01-C114.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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