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Sample GSM228011 Query DataSets for GSM228011
Status Public on Aug 20, 2011
Title P0*401_GPL97
Sample type RNA
 
Source name human myeloma cell P0*401_GPL97
Organism Homo sapiens
Characteristics human myeloma cell P0*401_GPL97
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit(50)
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard affymetrix protocol
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using GeneChip Scanner 3000
Description Gene expression data from myeloma patient before DEXA treatment
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 07, 2007
Last update date Aug 20, 2011
Contact name Yiming Zhou
E-mail(s) [email protected]
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL97
Series (1)
GSE8991 A Gene Expression-Based Risk Stratification Model for Newly Diagnosed Multiple Myeloma

Data table header descriptions
ID_REF probeset ID
VALUE normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1571.3 P
AFFX-BioB-M_at 2855.1 P
AFFX-BioB-3_at 685.9 P
AFFX-BioC-5_at 3849.2 P
AFFX-BioC-3_at 3225.2 P
AFFX-BioDn-5_at 3942.6 P
AFFX-BioDn-3_at 20710.0 P
AFFX-CreX-5_at 44202.9 P
AFFX-CreX-3_at 58868.7 P
AFFX-DapX-5_at 177.7 A
AFFX-DapX-M_at 193.8 A
AFFX-DapX-3_at 80.0 A
AFFX-LysX-5_at 28.9 A
AFFX-LysX-M_at 75.6 A
AFFX-LysX-3_at 158.9 A
AFFX-PheX-5_at 101.9 A
AFFX-PheX-M_at 60.8 A
AFFX-PheX-3_at 91.5 A
AFFX-ThrX-5_at 608.3 A
AFFX-ThrX-M_at 173.5 A

Total number of rows: 22645

Table truncated, full table size 404 Kbytes.




Supplementary file Size Download File type/resource
GSM228011_U133B-P0401-01-B444.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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