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Sample GSM227825 Query DataSets for GSM227825
Status Public on Aug 20, 2011
Title P0*778_GPL96
Sample type RNA
 
Source name human myeloma cell P0*778_GPL96
Organism Homo sapiens
Characteristics human myeloma cell P0*778_GPL96
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit(50)
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard affymetrix protocol
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using GeneChip Scanner 3000
Description Gene expression data from myeloma patient before DEXA treatment
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 07, 2007
Last update date Aug 20, 2011
Contact name Yiming Zhou
E-mail(s) [email protected]
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL96
Series (1)
GSE8991 A Gene Expression-Based Risk Stratification Model for Newly Diagnosed Multiple Myeloma

Data table header descriptions
ID_REF probeset ID
VALUE normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 380.7 M
AFFX-BioB-M_at 984.7 P
AFFX-BioB-3_at 488.8 P
AFFX-BioC-5_at 1650.7 P
AFFX-BioC-3_at 1201.8 P
AFFX-BioDn-5_at 1287.0 P
AFFX-BioDn-3_at 8165.9 P
AFFX-CreX-5_at 11726.9 P
AFFX-CreX-3_at 23304.9 P
AFFX-DapX-5_at 69.9 A
AFFX-DapX-M_at 129.0 A
AFFX-DapX-3_at 15.3 A
AFFX-LysX-5_at 4.6 A
AFFX-LysX-M_at 45.4 A
AFFX-LysX-3_at 94.0 M
AFFX-PheX-5_at 27.9 A
AFFX-PheX-M_at 62.2 A
AFFX-PheX-3_at 42.6 A
AFFX-ThrX-5_at 31.6 A
AFFX-ThrX-M_at 105.9 A

Total number of rows: 22283

Table truncated, full table size 409 Kbytes.




Supplementary file Size Download File type/resource
GSM227825_U133A-P0778-01-C427.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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