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Sample GSM227733 Query DataSets for GSM227733
Status Public on Aug 20, 2011
Title P0*85_GPL96
Sample type RNA
 
Source name human myeloma cell P0*85_GPL96
Organism Homo sapiens
Characteristics human myeloma cell P0*85_GPL96
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit(50)
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard affymetrix protocol
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using GeneChip Scanner 3000
Description Gene expression data from myeloma patient before DEXA treatment
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 07, 2007
Last update date Aug 20, 2011
Contact name Yiming Zhou
E-mail(s) [email protected]
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL96
Series (1)
GSE8991 A Gene Expression-Based Risk Stratification Model for Newly Diagnosed Multiple Myeloma

Data table header descriptions
ID_REF probeset ID
VALUE normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 451.2 P
AFFX-BioB-M_at 1058.2 P
AFFX-BioB-3_at 276.3 P
AFFX-BioC-5_at 1289.7 P
AFFX-BioC-3_at 784.9 P
AFFX-BioDn-5_at 1030.7 P
AFFX-BioDn-3_at 6078.2 P
AFFX-CreX-5_at 11336.8 P
AFFX-CreX-3_at 15970.4 P
AFFX-DapX-5_at 51.6 A
AFFX-DapX-M_at 156.6 P
AFFX-DapX-3_at 6.4 A
AFFX-LysX-5_at 6.1 A
AFFX-LysX-M_at 93.0 A
AFFX-LysX-3_at 51.7 A
AFFX-PheX-5_at 20.4 A
AFFX-PheX-M_at 32.0 A
AFFX-PheX-3_at 30.2 A
AFFX-ThrX-5_at 13.0 A
AFFX-ThrX-M_at 79.3 A

Total number of rows: 22283

Table truncated, full table size 408 Kbytes.




Supplementary file Size Download File type/resource
GSM227733_U133A-P0085-01-A396.CEL.gz 2.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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