NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM218211 Query DataSets for GSM218211
Status Public on Oct 30, 2007
Title plus Dox_TNF_1
Sample type RNA
 
Source name plus Dox_TNF_1
Organism Homo sapiens
Characteristics plus Dox_TNF_1
Extracted molecule total RNA
Extraction protocol Trizol followed by RNeasy cleanup
Label biotin
Label protocol 5 micrograms of total RNA was processed to produce biotinylated cRNA targets using standard Affymetrix protocols
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description HeLa cells were first induced with doxycycline for 17 hours and then exposed to TNF-alpha (40ng/ml). RNA samples were collected after 6 hours
Data processing MAS5
 
Submission date Aug 15, 2007
Last update date Aug 28, 2018
Contact name John R Walker
E-mail(s) [email protected]
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL570
Series (1)
GSE8784 Plasmodium Circumsporozoite Protein Promotes the Development of the Liver Stages of the Parasite
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript

Data table
ID_REF VALUE
AFFX-BioB-5_at 530.1396
AFFX-BioB-M_at 730.8521
AFFX-BioB-3_at 477.6961
AFFX-BioC-5_at 487.5197
AFFX-BioC-3_at 494.9067
AFFX-BioDn-5_at 4110.547
AFFX-BioDn-3_at 6879.742
AFFX-CreX-5_at 19861.18
AFFX-CreX-3_at 22460.68
AFFX-DapX-5_at 1852.792
AFFX-DapX-M_at 2827.788
AFFX-DapX-3_at 2953.678
AFFX-LysX-5_at 181.9648
AFFX-LysX-M_at 251.4151
AFFX-LysX-3_at 523.0842
AFFX-PheX-5_at 300.0739
AFFX-PheX-M_at 372.8269
AFFX-PheX-3_at 320.4868
AFFX-ThrX-5_at 447.2672
AFFX-ThrX-M_at 603.119

Total number of rows: 54675

Table truncated, full table size 1053 Kbytes.




Supplementary file Size Download File type/resource
GSM218211.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap