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Sample GSM213085 Query DataSets for GSM213085
Status Public on Jul 26, 2007
Title umbilical cord_nobpd: 3D
Sample type RNA
 
Source name umbilical cord tissue; low gestational age
Organism Homo sapiens
Characteristics 25 weeks male
Extracted molecule total RNA
Extraction protocol initial step used Trizol extraction of RNA, following manufacturer's recommended protocols, followed by Qiagen RNeasy Mini Kit per manufacturer's recommended protocols
Label biotin
Label protocol GeneChip® One-Cycle Target Labeling and Control Reagents according to the manufacturer's recommended protocols
 
Hybridization protocol Affymetrix Hybridization Oven 640 and GeneChip® Fluidics Station 450 according to the manufacturer's recommended protocols
Scan protocol Affymetrix GeneChip® Scanner 3000 according to the manufacturer's recommended protocols
Description low gestational age
Data processing MAS_5.0 scaled to 1500
 
Submission date Jul 25, 2007
Last update date Aug 28, 2018
Contact name Jennifer N Cohen
E-mail(s) [email protected]
Phone 6177328263
Organization name Brigham and Women's Hospital
Department Newborn Medicine
Street address 75 Francis Street
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL570
Series (1)
GSE8586 Expression profiles of extremely low gestational age newborns as predictors of BPD
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS_5.0 value
ABS_CALL

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 6121.6 P
AFFX-BioB-M_at 11039 P
AFFX-BioB-3_at 4677.8 P
AFFX-BioC-5_at 20670.2 P
AFFX-BioC-3_at 26626.1 P
AFFX-BioDn-5_at 38264.1 P
AFFX-BioDn-3_at 113420.8 P
AFFX-CreX-5_at 262113.2 P
AFFX-CreX-3_at 276375.5 P
AFFX-DapX-5_at 26.1 A
AFFX-DapX-M_at 450.4 A
AFFX-DapX-3_at 23.7 A
AFFX-LysX-5_at 120.6 A
AFFX-LysX-M_at 78.6 A
AFFX-LysX-3_at 46 A
AFFX-PheX-5_at 58.4 A
AFFX-PheX-M_at 265.3 A
AFFX-PheX-3_at 152.3 A
AFFX-ThrX-5_at 302.4 A
AFFX-ThrX-M_at 58.7 A

Total number of rows: 54675

Table truncated, full table size 1010 Kbytes.




Supplementary file Size Download File type/resource
GSM213085.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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