|
| Status |
Public on Nov 20, 2022 |
| Title |
ATAC-SEQ in neuron Rep2 |
| Sample type |
SRA |
| |
|
| Source name |
iPSC derived human cortical neuron
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: iPSC derived cortical neuron
disease state: non-diseased
|
| Growth protocol |
iPSC neurons were obtained from Cellular dynamics, and were harvested in post-plate day 14.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
ATAC-SEQ protocol was based on the original publication Buenrostro, et al. 2013
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
NextSeq 550 |
| |
|
| Description |
library strategy: ATAC-SEQ
|
| Data processing |
ATAC-SEQ protocol was based on the original publication Buenrostro, et al. 2013
ATAC-SEQ: Alignment by BWA
ATAC-SEQ: Peak call by MACS2
Supplementary_files_format_and_content: ATAC-SEQ: Regulatory peaks are listed
Genome_build: hg19
|
| |
|
| Submission date |
Apr 05, 2016 |
| Last update date |
Nov 20, 2022 |
| Contact name |
Jingjing Li |
| E-mail(s) |
[email protected]
|
| Organization name |
Stanford University
|
| Street address |
3165 Porter Drive
|
| City |
Palo Alto |
| ZIP/Postal code |
94304 |
| Country |
USA |
| |
|
| Platform ID |
GPL21697 |
| Series (1) |
| GSE79965 |
Regulatory genomic profiling in pure iPSC-derived human cortical neurons |
|
| Relations |
| BioSample |
SAMN04620186 |
| SRA |
SRX1683030 |
