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GEO accession:
Sample GSM207776
Query DataSets for GSM207776
Status
Public on Oct 10, 2007
Title
myb98_rep1
Sample type
RNA
Source name
stage 14 ovules
Organism
Arabidopsis thaliana
Characteristics
Ecotype: Columbia
1 month old plant
Extracted molecule
total RNA
Extraction protocol
Total RNA was purified from dissected uvules by RNAqueous -micro spin columns (Ambion)
Label
biotin
Label protocol
Oligo-DT selection, Reverse transcription, second strand synthesis, biotin labeling (Bioprime kit)
Hybridization protocol
hybridization protocol for eukaryotic cRNA target (Affymetrix)
Scan protocol
Chips were scanned by an Affymetrix Scanner 7G with GeneChip Operational System (Affymetrix)
Description
total RNA from myb98 ovules
Data processing
bg.adjust and quantile.normalize functions of affy R package were used on PM values
Submission date
Jul 05, 2007
Last update date
Aug 14, 2011
Contact name
Matthew Jones-Rhoades
E-mail(s)
[email protected]
Organization name
University of Chicago
Street address
W519, 929 E. 57th Street
City
Chicago
State/province
IL
ZIP/Postal code
60637
Country
USA
Platform ID
GPL1979
Series (1)
GSE8392
Genome-Wide Expression Profiling of the Arabidopsis Female Gametophyte Identifies Families of Small, Secreted Proteins
Data table header descriptions
ID_REF
VALUE
quantile normalized log2 expression values
Data table
ID_REF
VALUE
x2385_y16_chr1_25
4.03611963982247
x1347_y750_chr1_60
1.40067736261732
x1739_y754_chr1_113
1.10035782902581
x1691_y446_chr1_154
1.14336142771302
x2257_y1256_chr1_185
1.09016041158260
x543_y411_chr1_219
0.723301065529022
x351_y982_chr1_254
0.651740801968228
x419_y1787_chr1_287
0.519504230149617
x2237_y915_chr1_323
1.87585506716189
x1989_y1573_chr1_363
0.876460776431483
x1133_y2371_chr1_401
0.639083722059071
x1061_y329_chr1_441
0.620189242402061
x1723_y1730_chr1_476
1.39983623346537
x11_y1282_chr1_512
0.886993440015685
x1165_y468_chr1_543
0.875112862745058
x1005_y205_chr1_579
0.793891869162844
x897_y1613_chr1_615
0.976295495451234
x1011_y1297_chr1_651
1.49984733035689
x2245_y1614_chr1_684
1.07608265578155
x843_y321_chr1_719
1.10608298097090
Total number of rows:
3040256
Table truncated, full table size
124145 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM207776.CEL.gz
19.6 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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