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Sample GSM200056

Query DataSets for GSM200056

Status

Public on May 29, 2008

Title

E14 cortex GFPhigh Prominin+ cells, sample S2

Sample type

RNA

Source name

FACS-sorted cells from cortex of E14 embryos of hGFAP eGFP mice

Organism

Mus musculus

Characteristics

Selected by FACS for positive staining for prominin and GFP

Extracted molecule

total RNA

Extraction protocol

RNeasy Mini kit (Qiagen) with on column DNase treatment

Label

Biotin

Label protocol

MessageAmp II-Biotin Enhanced (Ambion, 1791)

Hybridization protocol

Affymetrix Expression protocol

Scan protocol

Affymetrix Expression protocol

Description

Prospective isolation of radial glia subtypes – lineage and transcriptom analysis Luisa Pinto1, Michael Mader1, Martin Irmler2, Marco Gentilini3, Federico Santoni4, Vassiliki Nikoletopoulou5, Steven Pollard6, Alessandro Bulfone3, Yves Barde5, Johannes Beckers2, and Magdalena Götz1,7,8

Data processing

Mas 5.0

Submission date

Jun 11, 2007

Last update date

Aug 28, 2018

Contact name

Johannes Beckers

E-mail(s)

[email protected]

Organization name

Helmholtz Zentrum Muenchen

Department

Institute of Experimental Genetics

Street address

Ingolstaedter Landstr. 1

City

Neuherberg

ZIP/Postal code

85764

Country

Germany

Platform ID

GPL1261

Series (1)

GSE8034

Prospective isolation of functionally distinct radial glial subtypes - lineage and transcriptome analysis

Relations

Reanalyzed by

GSE119085

Data table header descriptions
ID_REF
VALUE	Mas 5.0
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	266.093	P	9.4506e-05
AFFX-BioB-M_at	377.744	P	4.42873e-05
AFFX-BioB-3_at	275.291	P	5.16732e-05
AFFX-BioC-5_at	643.255	P	4.42873e-05
AFFX-BioC-3_at	819.061	P	4.42873e-05
AFFX-BioDn-5_at	1332.31	P	4.42873e-05
AFFX-BioDn-3_at	2615.71	P	4.42873e-05
AFFX-CreX-5_at	8671.38	P	4.42873e-05
AFFX-CreX-3_at	10743.8	P	4.42873e-05
AFFX-DapX-5_at	4.19093	A	0.852061
AFFX-DapX-M_at	4.32242	A	0.794268
AFFX-DapX-3_at	21.6384	A	0.175328
AFFX-LysX-5_at	12.0485	A	0.455413
AFFX-LysX-M_at	5.3879	A	0.724854
AFFX-LysX-3_at	18.5905	A	0.382599
AFFX-PheX-5_at	20.737	A	0.0780018
AFFX-PheX-M_at	13.558	A	0.559354
AFFX-PheX-3_at	17.525	A	0.544587
AFFX-ThrX-5_at	13.3678	A	0.5
AFFX-ThrX-M_at	4.47565	A	0.904333

Total number of rows: 45101

Table truncated, full table size 1370 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM200056.CEL.gz	3.5 Mb	(ftp)(http)	CEL
GSM200056.CHP.gz	247.0 Kb	(ftp)(http)	CHP
Processed data included within Sample table
Processed data provided as supplementary file