|
| Status |
Public on Nov 30, 2015 |
| Title |
Prefrontal Cortex Oxidative Bisulfite Treated, LBB44A.OXCE |
| Sample type |
genomic |
| |
|
| Source name |
Prefrontal cortex, oxidative bisulfite
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: no evidence of neurological impairment
tissue: prefrontal cortex
gender: male
treatment: oxidative bisulfite
donor id: LBB44
sentrixid: 9588557100_R02C01
|
| Treatment protocol |
Prefrontal cortex and cerebellum samples were sulfite treated or oxidative bisulfite treated.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Phenol chloroform DNA extraction.
|
| Label |
Cy3, Cy5
|
| Label protocol |
Illumina Infinium protocol.
|
| |
|
| Hybridization protocol |
Illumina Infinium protocol.
|
| Scan protocol |
Illumina Infinium protocol. Scanned using Illumina HiScan System.
|
| Description |
Sample name: LBB44A.OXCE
|
| Data processing |
Data loaded into R using methylumi, quantile normalised using Dasen function within wateRmelon (version 1.4.0).
|
| |
|
| Submission date |
Oct 26, 2015 |
| Last update date |
Nov 30, 2015 |
| Contact name |
Rebecca Georgina Smith |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Exeter
|
| Department |
Medical School
|
| Street address |
RILD, RD and E
|
| City |
Exeter |
| State/province |
Devon |
| ZIP/Postal code |
EX2 5DW |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE74368 |
Variation in 5-hydroxymethylcytosine (5hmC) across human cortex and cerebellum |
|
