|
| Status |
Public on May 09, 2016 |
| Title |
Low affinity 2 |
| Sample type |
SRA |
| |
|
| Source name |
Low affinity IgG1 LZ germinal center B cells
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
tissue: Spleen
cell type: germinal center B cells
|
| Treatment protocol |
High and low affinity IgG1 LZ GC B cells were FACS-sorted from 10 mice and pooled for each genotype.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
DNA libraries were prepared for sequencing using NEBNext Ultra RNA Library Prep Kit for Illumina (NEB)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 1500 |
| |
|
| Description |
S05500
|
| Data processing |
Read alignment: TopHat2 v2.0.8 with default settings
expression level: Cufflinks v2.1.1 with default settings
Genome_build: mm9
Supplementary_files_format_and_content: genes.fpkm: abundance measurements
|
| |
|
| Submission date |
Oct 05, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
TOMOHIRO KUROSAKI |
| E-mail(s) |
[email protected]
|
| Phone |
+81-6-6879-4458
|
| Organization name |
Osaka University Immunology Frontier Research Center
|
| Lab |
Laboratory of Lymphocyte Differentiation
|
| Street address |
3-1 Yamada-oka
|
| City |
Suita |
| State/province |
Osaka |
| ZIP/Postal code |
565-0871 |
| Country |
Japan |
| |
|
| Platform ID |
GPL18480 |
| Series (1) |
| GSE73729 |
Comparison of NP specific high and low affinity IgG1 Light zone GC B cells |
|
| Relations |
| BioSample |
SAMN04145894 |
| SRA |
SRX1304572 |
