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Status
Public on Dec 11, 2007
Title
Normal Cervix NC__C-12N
Sample type
RNA
Source name
normal squamous cervical epitheilium
Organism
Homo sapiens Characteristics
normal
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from 1000-5000 laser capture microdissected cells using the Arcturus PicoPure RNA isolation Kit (KIT0202).
Label
biotin
Label protocol
20-100 ng of total RNA was processed to produce biotinylated cRNA targets, using two rounds of T7-base RNA amplification with the Arcturus RiboAmp kit (KIT0201).
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Normal Cervix NC__C-12N
Data processing
Ann Arbor quantile-normalized trimmed-mean method
Submission date
May 15, 2007
Last update date
Feb 26, 2020
Contact name
Rork Kuick
E-mail(s)
[email protected] Phone
734-936-9241
Organization name
University of Michigan
Street address
University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City
Ann Arbor
State/province
MI
ZIP/Postal code
48109-2029
Country
USA
Platform ID
GPL96 Series (1)
GSE7803 Human pre-invasive and invasive cervical squamous cell carcinomas and normal cervical epithelia
Relations Reanalyzed by
GSE145976
Data table header descriptions ID_REF VALUE quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 2 logarithms
Data table ID_REF VALUE 206858_s_at
8.060695932
204416_x_at
5.64385619
206632_s_at
8.503825738
212949_at
6.906890596
207039_at
8.022367813
213008_at
6.459431619
202620_s_at
9.537218401
204947_at
8.864186145
219787_s_at
8.603626345
210093_s_at
9.707359132
204126_s_at
8.46760555
201663_s_at
8.807354922
218959_at
8.409390936
202338_at
9.071462363
218009_s_at
9.271463028
202580_x_at
8.948367232
206316_s_at
9.022367813
209935_at
8.903881846
212058_at
10.56605404
209900_s_at
9.071462363
22283 495 Kbytes .Supplementary file Size Download File type/resource GSM189384.CEL.gz
3.4 Mb
(ftp) (http) CEL
Processed data included within Sample table
