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|
| Status |
Public on Dec 11, 2007 |
| Title |
Test Sample C-2T-1-Stand |
| Sample type |
RNA |
| |
|
| Source name |
invasive squamous cell carcinoma of the cervix
|
| Organism |
Homo sapiens |
| Characteristics |
Test Sample
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from the tissue lysate using Trizol (Invitrogen) and cleanup performed with an RNeasy kit (Qiagen)
|
| Label |
biotin
|
| Label protocol |
5 µg of total RNA was processed to produce biotinylated cRNA targets, using a single round of in vitro transcription.
|
| |
|
| Hybridization protocol |
standard Affymetrix procedures
|
| Scan protocol |
standard Affymetrix procedures
|
| Description |
Test Sample C-2T-1-Stand
|
| Data processing |
Ann Arbor quantile-normalized trimmed-mean method
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| |
|
| Submission date |
May 15, 2007 |
| Last update date |
Dec 11, 2007 |
| Contact name |
Rork Kuick |
| E-mail(s) |
[email protected]
|
| Phone |
734-936-9241
|
| Organization name |
University of Michigan
|
| Street address |
University of Michigan, SPH II, 1415 Washington Heights, Room M2533
|
| City |
Ann Arbor |
| State/province |
MI |
| ZIP/Postal code |
48109-2029 |
| Country |
USA |
| |
|
| Platform ID |
GPL96 |
| Series (1) |
| GSE7803 |
Human pre-invasive and invasive cervical squamous cell carcinomas and normal cervical epithelia |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 2 logarithms |
| Data table |
| ID_REF |
VALUE |
| 206858_s_at |
8.550746785 |
| 204416_x_at |
11.5372184 |
| 206632_s_at |
9.784634846 |
| 212949_at |
8.6794801 |
| 207039_at |
10.84862294 |
| 213008_at |
10.73470962 |
| 202620_s_at |
12.33231633 |
| 204947_at |
8.592457037 |
| 219787_s_at |
11.54785851 |
| 210093_s_at |
9.876516947 |
| 204126_s_at |
10.16490693 |
| 201663_s_at |
12.35617683 |
| 218959_at |
9.523561956 |
| 202338_at |
11.09671515 |
| 218009_s_at |
12.41177578 |
| 202580_x_at |
10.68211676 |
| 206316_s_at |
9.831307244 |
| 209935_at |
8.933690655 |
| 212058_at |
12.65731845 |
| 209900_s_at |
9.920352855 |
Total number of rows: 22283
Table truncated, full table size 495 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM189381.CEL.gz |
3.6 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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