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Sample GSM187566 Query DataSets for GSM187566
Status Public on Nov 22, 2018
Title DIUpo4am.t15.r1
Sample type RNA
 
Source name Grape berry 14 weeks post flowering, collected at 4am, rep 1
Organism Vitis vinifera
Characteristics Cabernet Sauvignon
Growth protocol Berries were collected from bunches on field grown plants
Extracted molecule total RNA
Extraction protocol The modified RNAeasy RNA extraction method (Qiagen)
Label biotin
Label protocol Affymetrix One Cycle cDNA synthesis kit, Affymetrix GeneChip Sample Cleanup kit, Affymetrix IVT labeling kit
 
Hybridization protocol Affymetrix Fluidics Station 450, Biotin/Streptavidin detection
Scan protocol The GeneChips were scanned using theGeneChip Scanner 3000
Description Deseeded grape berry 14 weeks post flowering
Data processing Data normalized using the GCRMA R package from Bioconductor
 
Submission date May 07, 2007
Last update date Nov 22, 2018
Contact name Mark Raymond Thomas
E-mail(s) [email protected]
Organization name CSIRO
Department Plant Industry
Street address PO Box 350
City Glen Osmond
State/province SA
ZIP/Postal code 5064
Country Australia
 
Platform ID GPL1320
Series (1)
GSE7751 Analysis of gene expression in grape berries due to diurnal effects (DIU_06).

Data table header descriptions
ID_REF
VALUE GCRMA normalized signal intensities

Data table
ID_REF VALUE
1606368_s_at 14.31900871
1606427_at 9.050076321
1606428_at 3.85236211
1606429_at 2.536230643
1606430_at 9.718929214
1606431_at 10.16466665
1606432_at 8.341505062
1606433_at 9.830129298
1606434_at 9.875883538
1606435_at 9.906373661
1606436_s_at 13.45643385
1606437_at 10.28489224
1606438_at 9.587971968
1606439_s_at 11.45547596
1606440_at 2.239338382
1606441_at 2.801583291
1606442_at 11.70502469
1606443_at 3.623489901
1606444_at 7.590794132
1606445_a_at 6.995665409

Total number of rows: 16602

Table truncated, full table size 376 Kbytes.




Supplementary file Size Download File type/resource
GSM187566.CEL.gz 2.1 Mb (ftp)(http) CEL

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